Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12813558 | chr12:58072362 | A/C | 0.000204 | 478 | 14.75 | 19 | 16.8 | KM Plot |
| THCA | rs12816367 | chr12:1072696 | T/C | 0.000121 | 476 | 16.27 | 15.15 | 9.32 | KM Plot |
| THCA | rs12819172 | chr12:58064437 | A/G | 0.000264 | 479 | 14.73 | 19.23 | 15.17 | KM Plot |
| THCA | rs12822733 | chr12:1056030 | C/G | 8.82E-5 | 466 | 16.3 | 15.77 | 9.32 | KM Plot |
| THCA | rs12831104 | chr12:58071515 | C/G | 0.000264 | 479 | 14.75 | 19 | 15.17 | KM Plot |
| THCA | rs12832574 | chr12:58065977 | G/A | 0.000264 | 478 | 14.75 | 19.23 | 15.17 | KM Plot |
| THCA | rs12882170 | chr14:23201265 | C/T | 1.58E-6 | 490 | 15.2 | 17.07 | 21.67 | KM Plot |
| THCA | rs12883079 | chr14:36218320 | T/C | 5.16E-6 | 489 | 16.08 | 16.07 | 8.33 | KM Plot |
| THCA | rs12884627 | chr14:36236931 | A/G | 5.08E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs12886001 | chr14:36166496 | G/C | 5.07E-6 | 490 | 16.08 | 15.98 | 8.33 | KM Plot |
| THCA | rs12887938 | chr14:23187296 | T/C | 1.49E-6 | 485 | 15.27 | 17.1 | 21.67 | KM Plot |
| THCA | rs12891269 | chr14:23224246 | G/A | 3.66E-9 | 476 | 15.15 | 17.05 | 19.02 | KM Plot |
| THCA | rs12893376 | chr14:36072622 | C/A | 5.66E-6 | 483 | 16.08 | 16.07 | 8.33 | KM Plot |
| THCA | rs12894627 | chr14:36267977 | C/G | 5.07E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs12895863 | chr14:36269996 | A/G | 5.08E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |